If you are upgrading to 6.6.+ versions then it will automatically make your 6.5 version the backup partition. If the 6.6.+ is corrupted then you can boot from the second partition and move back to 6.5.+.
You can not move to the old partition and then upgrade it and still keep the 6.5.+ version. CPPM uses the second partition as the new versions partition so it will wipe your 6.5.+ to upgrade and still set the 6.3 as the inactive again.
The two separate partitions are used for version upgrades. 6.4 to 6.5. It will use the same partition for patch releases. 6.5.1 to 6.5.2.