Im trying to keep this explanation simple, as I could rant on about the config for a while.. but hoping its a fairly straightforward answer...
We use 3 vlans for controller/ap management... vlan 10 for controller managment, then 11 & 12 are used for AP termination. We have a master/local setup, but terminate APs on both, controlling this by using the LMS address from vlan 11 & 12. 11 being master on the master, and backup on the local, and vica versa for vlan 12. We were "tinkering" with some config (to resolve anther issue we had), and all of a sudden lost the master controler (vlan 10) and all of the AP's disappeared.. vlan 11 & 12 were fine, so I was a little suprised that the APs simply disappeared from the master... and never appeared on the local. I know that if the controller rebooted the APs would shift accross, the same if we closed down either 11 or 12 on whichver was the vrrp master, but not sure why what happened, happened....
I had assumed that we could lose the controller management network (vlan 10) which would ultimately break the link between the two controllers, but as the APs terminate via vlan 11 & 12, they would still be connected...