Hi,
Yes you can configure the controllers to actively disable rogue AP's though I prefer to be alerted about it and then decide if I want to do anything to the rogue AP. If setup properly you could send a deauth/auth flood to the rogue AP as well an ARP attack on the wired side.
Interferring are AP's that are not configured on your controller, but your AP's see them in the wireless spectrum but doesn't see them on the wired network. Suspected Rogue may be plugged into the network and are worth investigating. Rogue are plugged into your wired network and also providing wireless access. They should deifnately be looked into.
Assuming you have the WIPS licenses installed, you can use the wip wizard to configure what attacks to look for and how to deal with them.
Reference the Wireless Intrusion Detection section of the User Guide for detailed instructions and lots of good content on this.
Thanks,
Ian